CATH
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Data curation : Domain Chopping (DomChop) tutorial (last updated August, 2023)
(Tutorial documented by: Dr. Natalie Dawson and Dr. Vaishali Waman; DomChop webpage created by Dr. Ian Sillitoe)
What is domain chopping?
Domain chopping (DomChopping) is the process of 'chopping' polypeptide chains from the Protein Data Bank (PDB) into one or more protein structure domains.text/html2023-09-28T16:24:30+00:00vwamandata_curation:superfamily_naming_tutorial:index
http://wiki.cathdb.info/wiki-beta/doku.php?id=data_curation:superfamily_naming_tutorial:index&rev=1695918270&do=diff
Superfamily Naming exercise (Last updated in Sept 2023)
Useful websites:
<https://www.cathdb.info/>
<http://sfam.cathdb.info/>
Part I: Steps followed for naming a superfamily
* Look through representative domains as: ‘domain only’ to understand common secondary structures; as ‘domain in chain’ to observe the location of the domain in the chain; as ‘domain in PDB’ to understand the domain’s function and location in the protein.
* Check through FunFams/SwissProt/Keywords and refer to the mo…text/html2023-09-28T16:20:14+00:00vwamantutorials:index
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Tutorials
CATH-AlphaFlow ISMB/ECCB 2023 Tutorial
CATH-AlphaFlow is a Nextflow pipeline developed by CATH and the UCL Advanced Research Computing Centre. The pipeline runs various modules of a new version of CATH-Assign, called CATH-AF-CLI. Each module can be ran individually, or as batches via NextFlow.text/html2017-10-24T11:09:24+00:00sayonitutorials:ssap_litemol.png - created
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