Differences

This shows you the differences between two versions of the page.

--- data:index [2017/10/11 12:37] – sillitoe
+++ data:index [2017/10/14 15:28] (current) – sillitoe
@@ Line 2: / Line 2: @@
 ====== CATH Data Downloads ======
-This page provides information on the data files that are available to download from the CATH FTP site:
+This page provides information on the data files that are available to download from the [[ftp://orengoftp.biochem.ucl.ac.uk/cath | CATH FTP site]].
-[[ftp://orengoftp.biochem.ucl.ac.uk/cath]]
+See [[:index#cath_releases|CATH Releases]] for more information on CATH and CATH-Plus.
+===== CATH (daily snapshot) =====
-===== CATH (daily) =====
-We provide a daily snapshot of our very latest classifications and annotations as they happen in our pipeline. This enables users to find the most up-to-date information about their particular structure of interest. The amount of data we provide at this stage is limited mainly to domain boundaries and superfamily classification.
 ftp://orengoftp.biochem.ucl.ac.uk/cath/releases/daily-release/newest/
@@ Line 20: / Line 17: @@
 | cath-b-s35-newest.gz | List the latest domain boundaries and sequence family (C.A.T.H.S) annotations for all non-redundant sequence representatives |
-===== CATH-Plus =====
+===== CATH-Plus (full release) =====
-CATH-Plus adds a significant amount of data on top of the core classification information available in CATH. The CATH-Plus release process includes a number of manual annotation checks (e.g. looking for evidence that would support merging superfamilies, checking for errors, etc) in addition to adding a huge amount of information combining protein structure, sequence and function. As a result, there is a greater depth of information available in CATH-Plus, though it may not contain information on the most recent structures.
+ftp://orengoftp.biochem.ucl.ac.uk/cath/releases/latest-release/
-For information on the statistics from specific releases, see [[../release_notes|release notes]].
+For information on the statistics for specific releases, see [[../release_notes|release notes]].
-==== Data related to the CATH classification ====
+==== CATH classification data ====
 ftp://orengoftp.biochem.ucl.ac.uk/cath/releases/latest-release/cath-classification-data/
@@ Line 40: / Line 37: @@
 | cath-unclassified-list-<version>.txt | List of all unclassified protein chains and domains that are still being processed |
-===== Data related to non-redundant data sets =====
+==== Non-redundant data sets ====
 ftp://orengoftp.biochem.ucl.ac.uk/cath/releases/latest-release/non-redundant-data-sets/
 ^ File name ^ Description ^
-| cath-dataset-nonredundant-S[20%%|%%40]-v4_1_0.atom.fa | The ATOM sequences of the domains in the dataset (which only contain residues that have ATOM records in the PDB file) |
+| cath-dataset-nonredundant-S[20%%|%%40].atom.fa | The ATOM sequences of the domains in the dataset (which only contain residues that have ATOM records in the PDB file) |
-| cath-dataset-nonredundant-S[20%%|%%40]-v4_1_0.fa | The sequences of the domains in the dataset |
+| cath-dataset-nonredundant-S[20%%|%%40].fa | The sequences of the domains in the dataset |
-| cath-dataset-nonredundant-S[20%%|%%40]-v4_1_0.list | A list of the domains in the dataset; one domain ID per line |
+| cath-dataset-nonredundant-S[20%%|%%40].list | A list of the domains in the dataset; one domain ID per line |
-| cath-dataset-nonredundant-S[20%%|%%40]-v4_1_0.pdb.tgz | (A gzipped tar file containing) the PDB files of the domains in the data set |
+| cath-dataset-nonredundant-S[20%%|%%40].pdb.tgz | (A gzipped tar file containing) the PDB files of the domains in the data set |
-===== Data related to sequence data =====
+==== Sequence data ====
 ftp://orengoftp.biochem.ucl.ac.uk/cath/releases/latest-release/sequence-data/

CATH

User Tools

Site Tools

Differences

Page Tools