projects:funcnet:wsdl
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| projects:funcnet:wsdl [2008/10/28 12:07] – clegg | projects:funcnet:wsdl [2009/01/09 13:11] (current) – clegg | ||
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| + | <?xml version=" | ||
| + | <!-- | ||
| + | FuncNet version 1.0 predictor service template, January 2009 | ||
| + | --> | ||
| + | < | ||
| + | xmlns: | ||
| + | xmlns: | ||
| + | targetNamespace=" | ||
| + | | ||
| + | < | ||
| + | | ||
| + | < | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A list of one or more UniProt primary accession numbers. | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A 4-tuple containing the score results for a single pair of proteins. | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | The query protein. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | The reference protein. Note: for predictors which produce a | ||
| + | symmetrical measure of similarity or relatedness between two | ||
| + | proteins, we would expect to see the same score and p-value | ||
| + | regardless of which way round the query and reference proteins | ||
| + | are. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A numeric score produced by the predictor. FuncNet does not | ||
| + | enforce any constraints on the range or distribution of scores | ||
| + | produced by its predictors, so these scores are not comparable | ||
| + | between different predictors. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A p-value representing the probability that any two randomly- | ||
| + | chosen proteins in this proteome would be given a rawScore | ||
| + | equal to or higher than the rawScore for this pair, by this | ||
| + | predictor. These probabilities are used by the integrator to | ||
| + | calculate an overall score between each protein pair from the | ||
| + | output of all the predictors. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | Input type for the ScorePairwiseRelations operation. | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A list of query proteins (as UniProt primary accessions) | ||
| + | with unknown or partially-known function. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A list of reference proteins (as UniProt primary accessions) | ||
| + | which are known to be involved in a particular biological | ||
| + | phenomenon, structure, process etc. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | Output type for the ScorePairwiseRelations operation. | ||
| + | </ | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | A list of score profiles for pairs of proteins which have | ||
| + | been assigned a score by the predictor. The maximum number of | ||
| + | elements in this list is QxR where Q is the number of query | ||
| + | proteins and R is the number of reference proteins. The list | ||
| + | may be shorter as the predictor is not guaranteed to return | ||
| + | a score for every possible pair. | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | </ | ||
| + | | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | | ||
| + | <!-- | ||
| + | Everything above this comment is the same for every FuncNet service. | ||
| + | Below this comment, the string " | ||
| + | Also, the URLs will reflect the real location of the service. | ||
| + | --> | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | This method runs the prediction algorithm on two sets of proteins (identified | ||
| + | by UniProt primary accessions), | ||
| + | predictor performs a pairwise comparison between each query-reference pair. | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | transport=" | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | < | ||
| + | < | ||
| + | < | ||
| + | </ | ||
| + | </ | ||
| + | | ||
| + | </ | ||
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