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--- tutorials:eccb_t2_studer [2012/09/06 16:17] – romainstuder
+++ tutorials:eccb_t2_studer [2012/09/09 10:31] (current) – romainstuder
@@ Line 1: / Line 1: @@
-===== Practical =======
+===== Practical ======
+=== Introduction ===
--- Part I on amino acids dataset:
+The presentation is available here:
-  * [[tutorials:ECCB_T2_badasp | BADASP ]]
+{{:tutorials:eccb2012_t2_romainstuder.pdf.zip|}}
-  * [[tutorials:ECCB_T2_tdg09 | TDG09 ]]
-  * [[tutorials:ECCB_T2_fundi | FunDi ]]
-  * [[tutorials:ECCB_T2_diverge | Diverge ]]
--- Part II on nucleotides dataset:
+=== Useful tools ===
-  * [[tutorials:ECCB_T2_codeml | Codeml / PAML ]]
+Jalview: [[http://www.jalview.org/download.html]]
+(It could be better to increase the memory allocated to java: http://www.jalview.org/jvmmemoryparams.html )
+PyMOL: [[http://sourceforge.net/projects/pymol/]]
+(or [[http://sourceforge.net/projects/pymol/files/Legacy/]])
+NJplot: [[http://pbil.univ-lyon1.fr/software/njplot.html]]
+=== Part I on amino acids dataset: ===
+  * [[tutorials:ECCB_T2_badasp | BADASP: Analysis of the V-type proton ATPase 116 kDa subunit a gene family ]] (Linux / MacOSX / Windows)
+  * [[tutorials:ECCB_T2_tdg09 | TDG09: Analysis of the Hemagglutinin HA1 chain]] (Linux / MacOSX / Windows)
+  * [[tutorials:ECCB_T2_fundi | FunDi: Analysis of the GAPDH ]] (Linux / MacOSX)
+  * [[tutorials:ECCB_T2_diverge | Diverge 2: Analysis of the GAPDH ]] (Windows)
+===  Part II on nucleotides dataset:===
+  * [[tutorials:ECCB_T2_codeml | Codeml / PAML: Detection of positive selection in the serine/threonine-protein kinase gene family ]] (Linux / MacOSX / Windows)

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