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cath_tools
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Table of Contents
CATH Tools
This page aims to acknowledge the open source software projects that have been contributed to this resource and web site.
Web application
- Perl – The Perl Programming Language
- Catalyst – MVC web application framework
- Moose – Object system for Perl 5
- DBIx::Class – Object relational mapper
- BioPerl – Perl tools for bioinformatics, genomics and life science
Web deployment/architecture
- Varnish Cache – Web application accelerator
- Apache HTTP – HTTP server
- Apache Solr – Enterprise Search Platform
Web pages
Pipeline
* BLAST – Basic Local Alignment Search Tool * HMMER3 – Biosequence analysis using profile hidden Markov models * MAFFT – Multiple alignment program for amino acid or nucleotide sequences
1)
Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James Procter, Suzanna Lewis, Burkhard Rost, Tatyana Goldberg. “MSAViewer: interactive JavaScript visualization of multiple sequence alignments.” Bioinformatics (2016)
2)
Nicholas Rego and David Koes 3Dmol.js: molecular visualization with WebGL Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829
cath_tools.1470140742.txt.gz · Last modified: by sillitoe
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