CATH

CATH-AlphaFlow is a Nextflow pipeline developed by CATH and the UCL Advanced Research Computing Centre. The pipeline runs various modules of a new version of CATH-Assign, called CATH-AF-CLI.

Each module can be ran individually, or as batches via NextFlow. The tutorial on CATH-Alphaflow is freely available at: https://colab.research.google.com/drive/1dm8uHuUXMKS_Xn4O7gyB8Oz__WZVYPxi?usp=sharing (Authored by Dr. Nicola Bordin)

This course is developed in collaboration with EMBI-EBI training portal. This can be accessed freely from: https://www.ebi.ac.uk/training/online/courses/introduction-to-cath-database/

(Authored by: Professor Christine Orengo, Dr. Ian Sillitoe, Dr. Vaishali Waman, Ajay Mishra)

   [[data_curation:domain_chopping_documentation:index|Domain Chopping (DomChop) Criteria]] -This tutorial will introduce you to the manual curation process for domain chopping. This tutorial is regularly used during annual summer training programs, at the Orengo lab.
   [[data_curation:superfamily_naming_tutorial:index|Superfamily Naming exercise (Last updated in Sept 2023)]] - This tutorial will introduce you to the manual annotation process for naming superfamilies in CATH. This tutorial is regularly used and updated by the students who enrol for our annual summer training program conducted, at the Orengo lab. 

• A Tutorial on CATH and Gene3D

• Search Engine Tutorial - This tutorial will give you an introduction to how to use the CATH search engine and what information you can expect to derive from it.

• Combining Structural and Functional Analysis - Investigating protein structure and function

• An Introduction to CATH and Gene3D - For the IMPACT Workshop Oct 09.

• Detecting sites under functional divergence (Romain Studer)

• A Tutorial on CATH and Gene3D - for the workshop in Mali, December 2009

• An Introduction to Gene3D