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CATH Data

This page provides information on the data files that are available to download from CATH.

ftp://ftp.biochem.ucl.ac.uk/cath/

You can also look at the release notes for more information on what happened in each release.

Type Description
cath-domain-pdb-S35-{VERSION}.tgz Library of chopped PDB files for representative CATH domains
cath-domain-pdb-{VERSION}.tgz Library of chopped PDB files for all CATH domains
CathCathedral library Library of domain secondary structure graphs for CATHEDRAL for representative CATH domains
CathHmm HMM library file for CATH domains
CathHmm (+unclassified) HMM library file for CATH domains (including those that are waiting to be classified)
CathDomainDescriptionFile Full description of CATH domains
CathDomall Domain boundaries for each PDB Chain in “domall” format
CathUnclassifiedList List of CATH domains that are waiting to be assigned
Chains List of PDB chains in CATH
Domain Sequences (ATOM) FASTA sequence database for all CATH domains (based on ATOM records in PDB)
Domain Sequences (COMBS) FASTA sequence database for all CATH domains (based on COMBS sequence data)
CathDomainList List of assigned CATH domains
CathNames List of manually assigned names of CATH classification nodes
Representative Domain Sequences (ATOM) FASTA sequence database for CATH domains (clustered at different levels of sequence identity)
Representative Domain Sequences (COMBS) FASTA sequence database for CATH domains (clustered at different levels of sequence identity)
Representatives List of CATH representative domains (representing clusters at different levels of sequence identity)
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