The testing plugin is enabled and should be disabled.

You are here: index » tutorials » eccb_t2_codeml

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

tutorials:eccb_t2_codeml [2012/09/09 09:17]
romainstuder 		tutorials:eccb_t2_codeml [2012/09/09 10:47] (current)
romainstuder
Line 4: Line 4:
 === Install of PAML === === Install of PAML ===
  
-Windows:+Download it from here: http://abacus.gene.ucl.ac.uk/software/paml.html#download 
 + 
 +Windows (The bin/ folder already contains windows executables): 
 +<code>
 cd paml4.6/ cd paml4.6/
-- WINDOWS: The bin/ folder already contains windows executables.+</code> 
  
 Linux: Linux:
 +<code>
 cd paml4.5/ cd paml4.5/
 rm bin/*.exe rm bin/*.exe
Line 17: Line 22:
 mv baseml basemlg codeml pamp evolver yn00 chi2 ../bin mv baseml basemlg codeml pamp evolver yn00 chi2 ../bin
 chmod +x ../bin/* chmod +x ../bin/*
 +</code>
  
 MacOSX: MacOSX:
 +<code>
 cd paml4.6/ cd paml4.6/
 rm bin/*.exe rm bin/*.exe
Line 35: Line 41:
 mv baseml basemlg codeml pamp evolver yn00 chi2 ../bin mv baseml basemlg codeml pamp evolver yn00 chi2 ../bin
 chmod +x ../bin/* chmod +x ../bin/*
 +</code>
  
  
Line 200: Line 206:
 Two mlc output files are produced (as it can take time, you can download them directly in the next step).: Two mlc output files are produced (as it can take time, you can download them directly in the next step).:
   * {{:tutorials:tf105351.eut.3.53876.mlc.zip|TF105351.Eut.3.53876.mlc (alternative model)}}   * {{:tutorials:tf105351.eut.3.53876.mlc.zip|TF105351.Eut.3.53876.mlc (alternative model)}}
-  * {{:tutorials:tf105351.eut.3.53876.fixed.ctl.zip|TF105351.Eut.3.53876.fixed.mlc (null model)}} +  * {{:tutorials:tf105351.eut.3.53876.fixed.mlc.zip|TF105351.Eut.3.53876.fixed.mlc (null model)}}
  
  

Trace:

Print/export