The testing plugin is enabled and should be disabled.
Differences
This shows you the differences between two versions of the page.
|
playground:test [2012/09/03 13:21] sillitoe |
playground:test [2014/04/09 18:25] (current) sillitoe |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| - | Blah blah | + | === Moving from Jmol to JSmol === |
| + | |||
| + | I've created a new plugin that will render ''<jmol>'' code fragments using JSmol (Javascript-based) rather than Jmol (Java based). | ||
| + | |||
| + | The old code looked something like: | ||
| + | |||
| + | <code> | ||
| + | |||
| + | <jmol :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> | ||
| + | jmolButton( "cartoon on; cpk off; wireframe off; select *A; color lightblue; select | ||
| + | </jmol> | ||
| + | </code> | ||
| + | |||
| + | |||
| + | This now looks like: | ||
| + | |||
| + | <code> | ||
| + | <jsmol 2pfsA01 :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> | ||
| + | Jmol.jmolButton( "2pfsA01", "cartoon on; cpk off; wireframe off; select *A; color lightblue;" ); | ||
| + | </jsmol> | ||
| + | </code> | ||
| + | |||
| + | Note a few things have changed: | ||
| + | |||
| + | 1. the ''<jmol>'' tag is now replaced by ''<jsmol>'' | ||
| + | |||
| + | 2. the ''<jsmol>'' tag requires you to enter in a unique ''<id>'' as the first argument, e.g. ''2pf2A01'' | ||
| + | |||
| + | 3. this ''<id>'' is used in subsequent calls such as ''jmolButton("<script>")'' have been changed to ''Jmol.jmolButton( "<id>", "<script>" )'' | ||
| + | |||
| + | Example: | ||
| + | |||
| + | <code> | ||
| + | <jsmol 2pfsA01 :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> | ||
| + | Jmol.jmolButton( "2pfsA01", "cartoon on; cpk off; wireframe off; select *A; color lightblue; select 2-13:A, 14-32:A, 33-53:A, 63-67:A, 68-78:A, 79-93:A, 94-107:A, 108-116:A, 127-136:A, 137-145:A; color blue; select *B; color pink; select 33-44:B, 50-68:B, 74-84:B, 123-126:B, 128-138:B, 140-154:B, 527-540:B, 604-612:B, 616-625:B, 635-643:B; color red", "Click here" ); | ||
| + | </jsmol> | ||
| + | </code> | ||
| + | |||
| + | Looks like: | ||
| + | |||
| + | <jsmol jsmolid :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> | ||
| + | Jmol.jmolButton( "jsmolid", "cartoon on; cpk off; wireframe off; select *A; color lightblue; select 2-13:A, 14-32:A, 33-53:A, 63-67:A, 68-78:A, 79-93:A, 94-107:A, 108-116:A, 127-136:A, 137-145:A; color blue; select *B; color pink; select 33-44:B, 50-68:B, 74-84:B, 123-126:B, 128-138:B, 140-154:B, 527-540:B, 604-612:B, 616-625:B, 635-643:B; color red", "Click here" ); | ||
| + | </jsmol> | ||
| + | |||
| + | |||
| + | |||
| + | <jmol jmolid :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> | ||
| + | </jmol> | ||
| - | Foo | ||
| - | Bingo | ||
| - | {{:playground:genome3d-screenshot-p10073.png?200|}} | ||
