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playground:test [2014/04/09 12:55]
sillitoe 		playground:test [2014/04/09 18:25] (current)
sillitoe
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-JSmol test+=== Moving from Jmol to JSmol ===
  
-<jmol jmol_2pfsA01 :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> +I've created a new plugin that will render ''<jmol>'' code fragments using JSmol (Javascript-based) rather than Jmol (Java based). 
-Jmol.jmolButton( "jmol_2pfsA01", "cartoon on; cpk off; wireframe off; select *A; color lightblue; select 2-13:A, 14-32:A, 33-53:A, 63-67:A, 68-78:A, 79-93:A, 94-107:A, 108-116:A, 127-136:A, 137-145:A; color blue; select *B; color pink; select 33-44:B, 50-68:B, 74-84:B, 123-126:B, 128-138:B, 140-154:B, 527-540:B, 604-612:B, 616-625:B, 635-643:B; color red", "Click here" );+ 
 +The old code looked something like: 
 + 
 +<code> 
 + 
 +<jmol :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> 
 +jmolButton( "cartoon on; cpk off; wireframe off; select *A; color lightblue; select  
 +</jmol> 
 +</code> 
 + 
 + 
 +This now looks like: 
 + 
 +<code> 
 +<jsmol 2pfsA01 :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> 
 +Jmol.jmolButton( "2pfsA01", "cartoon on; cpk off; wireframe off; select *A; color lightblue;" ); 
 +</jsmol> 
 +</code> 
 + 
 +Note a few things have changed: 
 + 
 + 1. the ''<jmol>'' tag is now replaced by ''<jsmol>'' 
 + 
 + 2. the ''<jsmol>'' tag requires you to enter in a unique ''<id>'' as the first argument, e.g. ''2pf2A01'' 
 + 
 + 3. this ''<id>'' is used in subsequent calls such as ''jmolButton("<script>")'' have been changed to ''Jmol.jmolButton( "<id>", "<script>" )'' 
 + 
 +Example: 
 + 
 +<code> 
 +<jsmol 2pfsA01 :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> 
 +Jmol.jmolButton( "2pfsA01", "cartoon on; cpk off; wireframe off; select *A; color lightblue; select 2-13:A, 14-32:A, 33-53:A, 63-67:A, 68-78:A, 79-93:A, 94-107:A, 108-116:A, 127-136:A, 137-145:A; color blue; select *B; color pink; select 33-44:B, 50-68:B, 74-84:B, 123-126:B, 128-138:B, 140-154:B, 527-540:B, 604-612:B, 616-625:B, 635-643:B; color red", "Click here" ); 
 +</jsmol> 
 +</code> 
 + 
 +Looks like: 
 + 
 +<jsmol jsmolid :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400> 
 +Jmol.jmolButton( "jsmolid", "cartoon on; cpk off; wireframe off; select *A; color lightblue; select 2-13:A, 14-32:A, 33-53:A, 63-67:A, 68-78:A, 79-93:A, 94-107:A, 108-116:A, 127-136:A, 137-145:A; color blue; select *B; color pink; select 33-44:B, 50-68:B, 74-84:B, 123-126:B, 128-138:B, 140-154:B, 527-540:B, 604-612:B, 616-625:B, 635-643:B; color red", "Click here" ); 
 +</jsmol> 
 + 
 + 
 + 
 +<jmol jmolid :tutorials:2pfsA01_1wkbA01.pdb.gz 400 400>;
 </jmol> </jmol>
  
-Foo 
  
-Bingo 
  
-{{:playground:genome3d-screenshot-p10073.png?200|}} 

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