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tutorials:eccb_t2_studer [2012/09/06 16:17]
romainstuder
tutorials:eccb_t2_studer [2012/09/09 10:31] (current)
romainstuder
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-===== Practical =======+===== Practical ======
  
 +=== Introduction ===
  
--- Part I on amino acids dataset:+The presentation is available here:
  
-  * [[tutorials:ECCB_T2_badasp | BADASP ]] +{{:tutorials:eccb2012_t2_romainstuder.pdf.zip|}}
-  * [[tutorials:ECCB_T2_tdg09 | TDG09 ]] +
-  * [[tutorials:ECCB_T2_fundi | FunDi ]] +
-  * [[tutorials:ECCB_T2_diverge Diverge ]]+
  
  
--- Part II on nucleotides dataset:+=== Useful tools ===
  
-  * [[tutorials:ECCB_T2_codeml | Codeml / PAML ]]+Jalview: [[http://www.jalview.org/download.html]] 
 +(It could be better to increase the memory allocated to java: http://www.jalview.org/jvmmemoryparams.html ) 
 + 
 +PyMOL: [[http://sourceforge.net/projects/pymol/]] 
 +(or [[http://sourceforge.net/projects/pymol/files/Legacy/]]) 
 + 
 +NJplot: [[http://pbil.univ-lyon1.fr/software/njplot.html]] 
 + 
 +=== Part I on amino acids dataset: === 
 + 
 +  * [[tutorials:ECCB_T2_badasp | BADASP: Analysis of the V-type proton ATPase 116 kDa subunit a gene family ]] (Linux / MacOSX / Windows) 
 +  * [[tutorials:ECCB_T2_tdg09 | TDG09: Analysis of the Hemagglutinin HA1 chain]] (Linux / MacOSX / Windows) 
 +  * [[tutorials:ECCB_T2_fundi | FunDi: Analysis of the GAPDH ]] (Linux / MacOSX) 
 +  * [[tutorials:ECCB_T2_diverge | Diverge 2: Analysis of the GAPDH ]] (Windows) 
 + 
 + 
 +===  Part II on nucleotides dataset:=== 
 + 
 + 
 +  * [[tutorials:ECCB_T2_codeml | Codeml / PAML: Detection of positive selection in the serine/threonine-protein kinase gene family ]] (Linux / MacOSX / Windows)
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