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tutorials:eccb_t2_studer [2012/09/06 21:17]
romainstuder 		tutorials:eccb_t2_studer [2012/09/09 10:31] (current)
romainstuder
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 ===== Practical ====== ===== Practical ======
  
 +=== Introduction ===
 +
 +The presentation is available here:
 +
 +{{:tutorials:eccb2012_t2_romainstuder.pdf.zip|}}
 +
 +
 +=== Useful tools ===
 +
 +Jalview: [[http://www.jalview.org/download.html]]
 +(It could be better to increase the memory allocated to java: http://www.jalview.org/jvmmemoryparams.html )
 +
 +PyMOL: [[http://sourceforge.net/projects/pymol/]]
 +(or [[http://sourceforge.net/projects/pymol/files/Legacy/]])
 +
 +NJplot: [[http://pbil.univ-lyon1.fr/software/njplot.html]]
  
 === Part I on amino acids dataset: === === Part I on amino acids dataset: ===
  
-  * [[tutorials:ECCB_T2_badasp | BADASP ]] (Linux / MacOSX / Windows) +  * [[tutorials:ECCB_T2_badasp | BADASP: Analysis of the V-type proton ATPase 116 kDa subunit a gene family ]] (Linux / MacOSX / Windows) 
-  * [[tutorials:ECCB_T2_tdg09 | TDG09 ]] (Linux / MacOSX / Windows) +  * [[tutorials:ECCB_T2_tdg09 | TDG09: Analysis of the Hemagglutinin HA1 chain]] (Linux / MacOSX / Windows) 
-  * [[tutorials:ECCB_T2_fundi | FunDi ]] (Linux / MacOSX) +  * [[tutorials:ECCB_T2_fundi | FunDi: Analysis of the GAPDH ]] (Linux / MacOSX) 
-  * [[tutorials:ECCB_T2_diverge | Diverge 2 ]] (Windows)+  * [[tutorials:ECCB_T2_diverge | Diverge 2: Analysis of the GAPDH ]] (Windows)
  
  
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-  * [[tutorials:ECCB_T2_codeml | Codeml / PAML ]] (Linux / MacOSX / Windows)+  * [[tutorials:ECCB_T2_codeml | Codeml / PAML: Detection of positive selection in the serine/threonine-protein kinase gene family ]] (Linux / MacOSX / Windows)

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