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tutorials:eccb_t2_tdg09 [2012/09/07 20:54] romainstuder |
tutorials:eccb_t2_tdg09 [2012/09/08 16:26] (current) romainstuder |
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| === Detection of site in the Influenza Virus Hemagglutinin HA1 chain === | === Detection of site in the Influenza Virus Hemagglutinin HA1 chain === | ||
| + | |||
| + | We would like to know which sites are important between the Hemagglutinin HA1 of the virus in Avian (genes starting with Av_) and in Human (genes starting with Hu_). | ||
| <code>cd ./Tutorial/tdg09 # Folder of installation</code> | <code>cd ./Tutorial/tdg09 # Folder of installation</code> | ||
| Line 28: | Line 30: | ||
| The output is put in the file tdg.out. | The output is put in the file tdg.out. | ||
| - | We need to transform it with some unix tools (the four are one unique command): | + | We need to transform it with some unix tools (the four lines are one unique command): |
| + | (/!\ These Unix tools need Cygwin to work in Windows /!\ If you don't have Cygwin, you can continue the tutorial by skip the R part. The sites are given at the end). | ||
| <code> | <code> | ||
| Line 65: | Line 68: | ||
| Put a vertical line a the root of the tree to split the tree in two. | Put a vertical line a the root of the tree to split the tree in two. | ||
| - | => Visualise the position of these sites | + | => Visualise the position of these sites. |
