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tutorials:impact_oct_09 [2015/09/17 10:45] hafsa [The Superfamily summary] |
tutorials:impact_oct_09 [2015/09/17 10:48] (current) hafsa [The Genome comparison page] |
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| We can compare 2 genomes by searching from the "Compare Genomes" tab on the front page. | We can compare 2 genomes by searching from the "Compare Genomes" tab on the front page. | ||
| For example lets compare the human pathogen plasmodium vivax and the more lethal species plasmodium falciparum. | For example lets compare the human pathogen plasmodium vivax and the more lethal species plasmodium falciparum. | ||
| - | [[http://gene3d.biochem.ucl.ac.uk/genome/comparison?db=ensembl&taxon-1=PLASMODIUM+FALCIPARUM+3D7&taxon-2=PLASMODIUM+VIVAX|Direct link to Results]]. | + | [[http://gene3d.biochem.ucl.ac.uk/compareTaxons?taxon1=PLASMODIUM+VIVAX&taxon2=PLASMODIUM+FALCIPARUM+3D7&mode=genome|Direct link to Results]]. |
| we can click on individual tabs to see superfamilies, funfams and domain organisations compared between the 2 genomes by their counts of proteins between the two species. | we can click on individual tabs to see superfamilies, funfams and domain organisations compared between the 2 genomes by their counts of proteins between the two species. | ||
| For example on the funfams tab we can see that the "Rifin -like domain" is found in several sequences in P.falciparum and is absent from p.vivax. | For example on the funfams tab we can see that the "Rifin -like domain" is found in several sequences in P.falciparum and is absent from p.vivax. | ||
