The testing plugin is enabled and should be disabled.

This is an old revision of the document!


TOC

CATH Tools

This page aims to acknowledge the open source software projects that have been contributed to this resource and web site.

Web application

  • Perl – The Perl Programming Language
  • Catalyst – MVC web application framework
  • Moose – Object system for Perl 5
  • DBIx::Class – Object relational mapper
  • BioPerl Perl tools for bioinformatics, genomics and life science

Web deployment/architecture

Web pages

  • MSAViewer – Multiple Sequence Alignment Viewer ( @wilzbach) 1)
  • 3Dmol.js – A modern, object-oriented JavaScript library for visualizing molecular data 2)
  • D3 – Data-Driven Documents
  • BioJS – Modern data visualizations for the web
1) Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James Procter, Suzanna Lewis, Burkhard Rost, Tatyana Goldberg. “MSAViewer: interactive JavaScript visualization of multiple sequence alignments.” Bioinformatics (2016)
2) Nicholas Rego and David Koes 3Dmol.js: molecular visualization with WebGL Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829
Print/export