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cath_tools [2016/08/02 13:38] sillitoe |
cath_tools [2017/10/16 15:39] (current) sayoni [Pipeline] Added scorecons |
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| ===== Web pages ===== | ===== Web pages ===== | ||
| - | * [[https://github.com/wilzbach/msa | MSAViewer ]] -- Multiple Sequence Alignment Viewer (thanks [[https://github.com/wilzbach | @wilzbach]]) ((Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James Procter, Suzanna Lewis, Burkhard Rost, Tatyana Goldberg. "MSAViewer: interactive JavaScript visualization of multiple sequence alignments." Bioinformatics (2016) )) | + | * [[https://github.com/wilzbach/msa | MSAViewer ]] -- Multiple Sequence Alignment Viewer (thanks [[https://github.com/wilzbach | @wilzbach]]) ((Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James Procter, Suzanna Lewis, Burkhard Rost, Tatyana Goldberg. [[ http://doi.org/10.1093/bioinformatics/btw474 | "MSAViewer: interactive JavaScript visualization of multiple sequence alignments." ]] Bioinformatics (2016) )) |
| - | * [[https://github.com/3dmol/3Dmol.js | 3Dmol.js ]] -- A modern, object-oriented JavaScript library for visualizing molecular data (( Nicholas Rego and David Koes 3Dmol.js: molecular visualization with WebGL Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829 )) | + | * [[https://github.com/3dmol/3Dmol.js | 3Dmol.js ]] -- A modern, object-oriented JavaScript library for visualizing molecular data (( Nicholas Rego and David Koes [[ http://doi.org/10.1093/bioinformatics/btu829 | 3Dmol.js: molecular visualization with WebGL Bioinformatics ]] (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829 )) |
| * [[https://d3js.org/ | D3 ]] -- Data-Driven Documents | * [[https://d3js.org/ | D3 ]] -- Data-Driven Documents | ||
| * [[https://biojs.net BioJS | BioJS ]] -- Modern data visualizations for the web | * [[https://biojs.net BioJS | BioJS ]] -- Modern data visualizations for the web | ||
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| * [[ http://blast.ncbi.nlm.nih.gov/Blast.cgi | BLAST ]] -- Basic Local Alignment Search Tool | * [[ http://blast.ncbi.nlm.nih.gov/Blast.cgi | BLAST ]] -- Basic Local Alignment Search Tool | ||
| - | * [[ http://hmmer.org | HMMER3 ]] -- Biosequence analysis using profile hidden Markov models | + | * [[ http://hmmer.org | HMMER3 ]] -- Biosequence analysis using profile Hidden Markov Models |
| * [[ http://mafft.cbrc.jp/alignment/software/ | MAFFT ]] -- Multiple alignment program | * [[ http://mafft.cbrc.jp/alignment/software/ | MAFFT ]] -- Multiple alignment program | ||
| + | * [[ https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/valdar/scorecons_server.pl | Scorecons ]] -- Scores residue conservation in a multiple sequence alignment | ||
