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CATH Data
This page provides information on the data files that are available to download from CATH.
ftp://ftp.biochem.ucl.ac.uk/cath/
You can also look at the release notes for more information on what happened in each release.
| Type | Description |
|---|---|
| cath-domain-pdb-S35-{VERSION}.tgz | Library of chopped PDB files for representative CATH domains |
| cath-domain-pdb-{VERSION}.tgz | Library of chopped PDB files for all CATH domains |
| CathCathedral library | Library of domain secondary structure graphs for CATHEDRAL for representative CATH domains |
| CathHmm | HMM library file for CATH domains |
| CathHmm (+unclassified) | HMM library file for CATH domains (including those that are waiting to be classified) |
| CathDomainDescriptionFile | Full description of CATH domains |
| CathDomall | Domain boundaries for each PDB Chain in “domall” format |
| CathUnclassifiedList | List of CATH domains that are waiting to be assigned |
| Chains | List of PDB chains in CATH |
| Domain Sequences (ATOM) | FASTA sequence database for all CATH domains (based on ATOM records in PDB) |
| Domain Sequences (COMBS) | FASTA sequence database for all CATH domains (based on COMBS sequence data) |
| CathDomainList | List of assigned CATH domains |
| CathNames | List of manually assigned names of CATH classification nodes |
| Representative Domain Sequences (ATOM) | FASTA sequence database for CATH domains (clustered at different levels of sequence identity) |
| Representative Domain Sequences (COMBS) | FASTA sequence database for CATH domains (clustered at different levels of sequence identity) |
| Representatives | List of CATH representative domains (representing clusters at different levels of sequence identity) |
