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release_notes [2011/01/20 19:55]
sillitoe
release_notes [2017/10/14 16:22] (current)
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 ====== CATH Release Notes ====== ====== CATH Release Notes ======
  
-This page contains the release notes for each major version of CATH.+The CATH database is constantly being updated through automated algorithms and manual curation.
  
-[[http://release.cathdb.info|download release data]]+The most up-to-date annotations can be found in the [[data:index CATH daily snapshots]] where we provide a limited amount of information (domain boundaries and superfamily assignments) for the very latest snapshot of the current database.
  
 +We also provide major releases (CATH-Plus) where we take a branch of the database
 +through the full release process: adding internal checks, associating functional and sequence annotations, 
 +creating datasets, and so on.
  
-===== CATH Version 3.4 =====+Information from all releases can be downloaded from the [[data:index| Download]] page, general stats on each CATH-Plus release is provided below. 
 + 
 +===== CATH-Plus Version 4.2 ===== 
 + 
 +**Based on PDB release: July 01, 2017** 
 + 
 +Changes since v4.1: 
 + 
 +  * 125,858 newly classified domains 
 +  * 24,765 newly processed PDBs 
 + 
 +^ Class   ^ Architecture  ^ Topology  ^ Homologous Superfamily  ^ S35 Family  ^ S60 Family  ^ S95 Family  ^ S100 Family  ^ Domains  ^ 
 +| Class 1 | 5  | 405  | 2174 | 7771  | 9948  | 12797 | 24176  | 90302  | 
 +| Class 2 | 21 | 244  | 1395 | 7011  | 9627  | 15169 | 26904  | 110260 | 
 +| Class 3 | 14 | 634  | 2428 | 16196 | 23313 | 29670 | 60020  | 229776 | 
 +| Class 4 | 1  | 108  | 122  | 311   | 399   | 542   | 876    | 4519   | 
 +| **TOTAL**   | **41** | **1391** | **6119** | **31289** | **43287** | **58178** | **111976** | **434857** | 
 + 
 +===== CATH-Plus Version 4.1 ===== 
 + 
 +**Based on PDB release: Jan 01, 2015** 
 + 
 +Changes since v4.0: 
 + 
 +  * 73,141 newly classified domains 
 +  * 17,444 newly processed PDBs 
 + 
 + 
 +^ Class   ^ Architecture  ^ Topology  ^ Homologous Superfamily  ^ S35 Family  ^ S60 Family  ^ S95 Family  ^ S100 Family  ^ Domains  ^ 
 +| Class 1 | 5  | 396  | 908  | 4645  | 6190  | 8174  | 16299 | 61579  | 
 +| Class 2 | 20 | 241  | 547  | 4641  | 6639  | 10687 | 18460 | 78049  | 
 +| Class 3 | 14 | 628  | 1160 | 11617 | 17134 | 21834 | 44966 | 165745 | 
 +| Class 4 | 1  | 108  | 122  | 252   | 322   | 442   | 697   | 3626   | 
 +| **TOTAL** | **40** | **1373** | **2737** | **21155** | **30285** | **41137** | **80422** | **308999** | 
 + 
 + 
 + 
 +===== CATH-Plus Version 4.0 ===== 
 + 
 +**Based on PDB release: March 26, 2013** 
 + 
 +Changes since v3.5: 
 + 
 +  * 62,322 newly assigned domains 
 +  * 112 new homologous superfamilies 
 +  * 62 new folds (topologies) 
 + 
 +^ Class   ^ Architecture  ^ Topology  ^ Homologous Superfamily  ^ S35 Family  ^ S60 Family  ^ S95 Family  ^ S100 Family  ^ Domains  ^ 
 +| Class 1 | 5  | 397  | 907  | 3879  | 5118  | 6737  | 13368 | 48121  | 
 +| Class 2 | 20 | 241  | 547  | 3650  | 5221  | 8373  | 14526 | 58944  | 
 +| Class 3 | 14 | 626  | 1158 | 9171  | 13415 | 17047 | 35313 | 125772 | 
 +| Class 4 | 1  | 111  | 126  | 233   | 293   | 410   | 651   | 3021   | 
 +| **TOTAL** | **40** | **1375** | **2738** | **16933** | **24047** | **32567** | **63858** | **235858** | 
 + 
 + 
 + 
 + 
 +===== CATH-Plus Version 3.5 ===== 
 + 
 +**Based on PDB release: Sept 20, 2011** 
 + 
 +Changes since v3.4: 
 + 
 +  * 20,616 newly assigned domains 
 +  * 77 new homologous superfamilies 
 +  * 31 new folds (topologies) 
 + 
 +The table below summarises the number of clusters within each of the four classes in CATH. 
 + 
 +^ Class   ^ Architecture  ^ Topology  ^ Homologous Superfamily  ^ S35 Family  ^ S60 Family  ^ S95 Family  ^ S100 Family  ^ Domains  ^ 
 +| 1       | 5  | 386 | 875  | 2917 | 3843 | 5069  | 10098 | 37038 | 
 +| 2       | 20 | 229 | 520  | 2618 | 3796 | 6147  | 10744 | 43881 | 
 +| 3       | 14 | 594 | 1113 | 6183 | 9107 | 11668 | 24452 | 90029 | 
 +| 4       | 1  | 104 | 118  | 208  | 259  | 359   | 574   | 2588  | 
 +| **Total** | **40** | **1313** | **2626** | **11926** | **17005** | **23243** | **45868** | **173536** |  
 + 
 + 
 +===== CATH-Plus Version 3.4 =====
  
 **Based on PDB release: Nov 13, 2010** **Based on PDB release: Nov 13, 2010**
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 | **Total** | **40** | **1282** | **2549** | **11330** | **15778** | **21325** | **41488** | **152920** | | **Total** | **40** | **1282** | **2549** | **11330** | **15778** | **21325** | **41488** | **152920** |
  
-===== CATH Version 3.3 =====+===== CATH-Plus Version 3.3 =====
  
 **Based on PDB release: July 7, 2009** **Based on PDB release: July 7, 2009**
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-===== CATH Version 3.2 =====+===== CATH-Plus Version 3.2 =====
  
 **Based on PDB release: July 14, 2008** **Based on PDB release: July 14, 2008**
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-===== CATH Version 3.1 =====+===== CATH-Plus Version 3.1 =====
  
 **Based on PDB release: 14 Jan, 2007** **Based on PDB release: 14 Jan, 2007**
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-===== CATH Version 3.0 =====+===== CATH-Plus Version 3.0 =====
  
 **Based on PDB release: 5 May, 2006** **Based on PDB release: 5 May, 2006**
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 | 4 | 1 | 93 | 104 | 165 | 197 | 267 | 387 | 1373  | | 4 | 1 | 93 | 104 | 165 | 197 | 267 | 387 | 1373  |
 | **Total** | **40** | **1110** | **2147** | **7841** | **10016** | **13021** | **23930** | **86151**  | | **Total** | **40** | **1110** | **2147** | **7841** | **10016** | **13021** | **23930** | **86151**  |
- 
  
  
  
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