The testing plugin is enabled and should be disabled.
Practical
Introduction
The presentation is available here:
Useful tools
Jalview: http://www.jalview.org/download.html (It could be better to increase the memory allocated to java: http://www.jalview.org/jvmmemoryparams.html )
PyMOL: http://sourceforge.net/projects/pymol/ (or http://sourceforge.net/projects/pymol/files/Legacy/)
Part I on amino acids dataset:
- BADASP: Analysis of the V-type proton ATPase 116 kDa subunit a gene family (Linux / MacOSX / Windows)
- TDG09: Analysis of the Hemagglutinin HA1 chain (Linux / MacOSX / Windows)
- FunDi: Analysis of the GAPDH (Linux / MacOSX)
- Diverge 2: Analysis of the GAPDH (Windows)
Part II on nucleotides dataset:
- Codeml / PAML: Detection of positive selection in the serine/threonine-protein kinase gene family (Linux / MacOSX / Windows)
