CATH-AlphaFlow is a Nextflow pipeline developed by CATH and the UCL Advanced Research Computing Centre. The pipeline runs various modules of a new version of CATH-Assign, called CATH-AF-CLI.

Each module can be ran individually, or as batches via NextFlow. The tutorial on CATH-Alphaflow is freely available at: https://colab.research.google.com/drive/1dm8uHuUXMKS_Xn4O7gyB8Oz__WZVYPxi?usp=sharing (Authored by Dr. Nicola Bordin)

This course is developed in collaboration with EMBI-EBI training portal. This can be accessed freely from: https://www.ebi.ac.uk/training/online/courses/introduction-to-cath-database/

(Authored by: Professor Christine Orengo, Dr. Ian Sillitoe, Dr. Vaishali Waman, Ajay Mishra)

The manual curation process for domain chopping and superfamily naming are described in below pages. * Domain Chopping (DomChop) Criteria -This tutorial will introduce you to the manual curation process for domain chopping. This tutorial is regularly used during annual summer training programs, at the Orengo lab.

• A Tutorial on CATH and Gene3D

• Search Engine Tutorial - This tutorial will give you an introduction to how to use the CATH search engine and what information you can expect to derive from it.

• Combining Structural and Functional Analysis - Investigating protein structure and function

• An Introduction to CATH and Gene3D - For the IMPACT Workshop Oct 09.

• Detecting sites under functional divergence (Romain Studer)

• A Tutorial on CATH and Gene3D - for the workshop in Mali, December 2009

• An Introduction to Gene3D