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tutorials:mali_tutorial [2015/09/22 15:05] hafsa [The HUP Superfamily in CATH] |
tutorials:mali_tutorial [2015/09/22 15:07] (current) hafsa [A Short Introduction to CATH and Gene3D] |
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| Each level has a **CATH code** associated with it. Have a look at the following: | Each level has a **CATH code** associated with it. Have a look at the following: | ||
| - | {{:tutorials:cath_code.png|}} | + | {{:tutorials:class_3_screenshot.png|}} |
| In this example, the CATH code for the domain 1tsrB00 is 2.60.40.720. The **2** refers to the class to which the domain belongs (mainly beta), the **2.60** refers to the architecture, the **2.60.40** refers to the actual fold (topology) the domain adopts and **2.60.40.720** is the homologous superfamily code. | In this example, the CATH code for the domain 1tsrB00 is 2.60.40.720. The **2** refers to the class to which the domain belongs (mainly beta), the **2.60** refers to the architecture, the **2.60.40** refers to the actual fold (topology) the domain adopts and **2.60.40.720** is the homologous superfamily code. | ||
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| If you click on the cathnodes tab and then click the hyperlinked cathcode displayed, you will be taken to a page that looks like this: | If you click on the cathnodes tab and then click the hyperlinked cathcode displayed, you will be taken to a page that looks like this: | ||
| - | {{:tutorials:class_3_screenshot.png|}} | + | {{:tutorials:screenshot.png|}} |
| At the top left hand side of the screen there is a table which gives you information on what class, architecture and fold the HUP superfamily (which is described as //Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1// in CATH) resides. | At the top left hand side of the screen there is a table which gives you information on what class, architecture and fold the HUP superfamily (which is described as //Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1// in CATH) resides. | ||
