projects:funcnet:perlsample

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  #!/usr/bin/perl -w
  
  # Very simple Perl client script for FuncNet prediction services
  
  use strict;
  use warnings;
  
  use Data::Dumper;
  
  use XML::Compile::WSDL11;
  use XML::Compile::Transport::SOAPHTTP;
  use XML::Compile::Schema;
  
  my $geco_wsdl = "GecoService.wsdl"; # You must download this yourself (or use the full CPAN client)
  
  # warn "XML::Compile::WSDL11->new( $geco_wsdl )";
  
  my $wsdl = XML::Compile::WSDL11->new( $geco_wsdl );
  
  # warn "got: $wsdl";
  
  my @op_defs = $wsdl->operations();
  
  # warn "operations: ", join (", ", Dumper( @op_defs ) );
  
  # warn "\$wsdl->compileClient( '{http://cathdb.info/FuncNet_0_1/}GecoService' );";
  
  my $op   = $wsdl->operation( 
                  operation   => 'ScorePairwiseRelations', 
                  port        => 'GecoPort', 
                  service     => '{http://cathdb.info/FuncNet_0_1/}GecoService' ,
                  binding     => '{http://cathdb.info/FuncNet_0_1/}GecoBinding'
               );
  
  my $op_call = $op->compileClient();
  
  # proteins1 is query set, proteins2 is reference set
  my $parameters = {
      proteins1 => { p => [ 'A3EXL0', 'A4D2E0', 'Q8NFN7', 'O75865', 'A8K8W3', 'A8K3I6' ] },
      proteins2 => { p => [ 'Q5SR05', 'Q9H8H3', 'P22676', 'Q9UHT8', 'P56277', 'P49366' ] } 
  };
  
  my ( $answer, $trace ) = $op_call->( parameters => $parameters );
  
  # warn Dumper( $trace );
  
  # warn "Answer:", Dumper(  $answer->{ parameters } );
  
  print "Prot 1\tProt 2\tP-value\n";
  
  foreach my $result ( @{ $answer->{ parameters }->{ s } } )
  {
      print $result->{ p1 } . "\t" . $result->{ p2 } . "\t" . $result->{ pv } . "\n";
  }

Trace: • suggestions • beta_sheet • sift • crossover • perlsample • cathdomainlist • ef_hand • gemma • domain_chopping_documentation • mali_nov_09

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